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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggttctttctactgtatatatatgctttaaacgatatggaaatatcccctgtatttgtggtgccttctgtttcaggtttatgtttgctaacaatctttttctgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTCTCGGTCAAGGCCTTTGTCTTCTGTGGGTATCTTTCTTGCGTGGCATCTT

Basic information

species Oryza sativa
transcript LOC_Os01g29390.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88358911|gb|CI619415.1|CI619415
EST:     CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG                         CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: gi|88368648|gb|CI651116.1|CI651116
EST:     CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG                         CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: gi|88591001|gb|CI707906.1|CI707906
EST:     CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG                         CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: gi|88336897|gb|CI626977.1|CI626977
EST:     CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG                         CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: gi|88580946|gb|CI697910.1|CI697910
EST:     CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG                         CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
EST: gi|88360999|gb|CI625305.1|CI625305
EST:     CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAG                         CTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC
genomic: CTTGATTGATTTTGCCAAGGAATGTTCGGGCTGCTGGTTCAATCAAGCAGgttaggttct ... tgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtgccttctgtttcaggtttatgtttgctaacaatctttttctgttgcgcagCTCTGGTCACCTTTATTGGTGACCGTCCCTTTCTACCCTTTCTTCTATTTCTCGGTCAAGGCCTTTGTCTTCTGTGGGTATCTTTCTTGCGTGGCATCTT
                            tgctaac  putative branch site (score: 1)
                                     tctttttctgttgc  putative PPT
                    tttatgttt  TA-rich tract