Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAAGTCTGTCTTCATATAAAGGTTCTTACGCAGGTTCATTTGAATCTTCGTGTGATTCAGgcaattactcttcacaggcataacttactctcactagttaattttctatcagaacaacattaaatcattgacgacaaataaatttggttaatttctgtgttctaaattag

Basic information

species Oryza sativa
transcript LOC_Os01g22390.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g22390.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G118641_T01 (Zea mays), 5'ss of exon 8
GACCAAGTCTGTCTTCATATAAAGGTTCTTACGCAGGTTCATTTGAATCTTCGTGTGATTCAGgcaattactcttcacaggcataacttactctcactagttaattttctatcagaacaacattaaatcattgacga-caaataaatttggttaatttctgtgttctaaattag
||||||| ||||||| || |||| ||||||| |||| ||| |||| |||||||||||||||| | ||||    ||   |    |   ||||| |      |||  ||| ||   | |||||   || |  || || | ||||     || ||| |||                 
GACCAAGCCTGTCTTTATGTAAAAGTTCTTATGCAGATTCCTTTGGATCTTCGTGTGATTCAAgtaattgaaatt---accttttttttactatttactatta--tttttacttgtacaactgaaactttttcactatcaaaactgctttgttgattag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665170|gb|CK053856.1|CK053856
EST:     TTCATATAAAGGTTCTTACGCAGGTTCATTTGAATCTTCGTGTGATTCAG                         GTGGCTGCTAGTGCATTTGTTGATCTTAGTCAACAAATTGGACCAGAAAAT
genomic: TTCATATAAAGGTTCTTACGCAGGTTCATTTGAATCTTCGTGTGATTCAGgcaattactc ... tctaaattagGTGGCTGCTAGTGCATTTGTTGATCTTTGTCAACAAATTGGACCAGAAAAT