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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCGTCGAATCCTTTCGGGCCTCCCGGGCTCCTGCTTCTCCTTCGTGCACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgccaccctatttatctcttcgtttctgtgtgcttagcctaggcgttgctccaccctttggagcttcatttcatattcctgcgaggctgatcc...

Basic information

species Oryza sativa
transcript LOC_Os01g22390.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g22390.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G118641_T01 (Zea mays), 5'ss of exon 1
GGAGCGTCGAATCCTTTCGGGCCTCCCGGGCTCCTGCTTCTCCTTCGTGCACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgccaccctatttatctcttcgtttctgtgtgcttagcctaggcgttgctccaccctttggagcttcatttc--atattcctgcgaggctgatcc--
|   || |   ||||    | |||| | |||||| || ||||||||||  ||||||||  ||| || || |||||||||||| || |||||||||| |||||    ||||  |       | |||||  | |||| | |||  |    |    |||||      |||   ||    | |     |||  |   |    | |   
GAGACGCCTTGTCCTACGTGACCTCGCCGGCTCCGGCCTCTCCTTCGTCTACGGCCTCTCCGACTCACCGCTCCCCTTCGCCGCCTCCGCCGTCGTTCAGgt----ccgcgtcgactcccacctctttatctctgggcgctctggtcggcatgtgctctcaaaattgttcctaggctcctagctttctcgtccgttcaaacgcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88340963|gb|CI638519.1|CI638519
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCCTCCAG                         ATTGCATCTGATGGGGCTGAGGAATGTAATGGGAG
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGAGGAATGTAATGGGAG
EST: gi|88354097|gb|CI636295.1|CI636295
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAC                         ATTGCATCTGATGGGGCTGA
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGA
EST: gi|88330251|gb|CI658560.1|CI658560
EST:     ACGGCCTCCACGACTCCCCTCTCCCCTTCCCCTCCGCCGCCGTCGTCCAG                         ATTGCATCTGATGGGGCTGAGGAATGTAA
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGAGGAATGTAA
EST: gi|88349016|gb|CI654060.1|CI654060
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAG                         ATTGCATCTGATGGGGCTGAGGAATGT
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGAGGAATGT
EST: gi|88393107|gb|CI616591.1|CI616591
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAG                         ATTGCATCTGATGGGGCTGAGGAATGTAATGGG
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGAGGAATGTAATGGG
EST: gi|88340108|gb|CI650555.1|CI650555
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAG                         ATTGCATCTGATGGG
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGG