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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATTGTCAAATGCATTTCGTGGTAGTTTATATACAACTATGCATTACATGGAATCCAAAGATAAACTTGTTGCTGGTATGGGAAATGGTTCAATCAGgtattgcactttttttctcaattttttggaattagtgctttagctgagtagaatgtgtgcatggacaacaagtgccaggttgcacatgtgcacaattttg...

Basic information

species Oryza sativa
transcript LOC_Os01g22390.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g22390.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G118641_T01 (Zea mays), 5'ss of exon 14
GAATATTGTCAAATGCATTTCGTGGTAGTTTATATACAACTATGCATTACATGGAATCCAAAGATAAACTTGTTGCTGGTATGGGAAATGGTTCAATCAGgtattgcactttttttctcaattttttggaattagtgctttagctgagtagaatgtgtgcatggacaacaagtgccaggttgcacatgtgcacaattttg----
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||  | | || ||||||||||||||||||||||||||||||||||||||   ||| | |  ||| ||||||    ||  |  | |  |||||||   | |||  |   | || |  |  |      | |   |     | |  |    
GAATATTGTCAAATGCATTTCGTGGTAGTTTGTATACGACTATGCATTATATGGAATCTGAGGGTATACTTGTTGCTGGTATGGGAAATGGTTCAATCAGgtattaatcttgtgtcatcagttttttttgtttgattatgtt-ctgagta---tatgttgagaaaaaatatctttccatcaactctactctttgactgggaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11442561|gb|BF430464.1|BF430464
EST:     ATGGAATCCAAAGATAAACTTGTTGCTGGTATGGGAAATGGTTCAATCAG                         ATTTATTGATATTTCTCAAGATCAGAAGCTGCATTTATGGAAGAGTGACTC
genomic: ATGGAATCCAAAGATAAACTTGTTGCTGGTATGGGAAATGGTTCAATCAGgtattgcact ... gtccatgcagATTTATTGATATTTCTCAAGATCAGAAGCTGCATTTATGGAAGAGTGACTC