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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaacattggtgatcgggtgtgaaccccttattttaacgctcatatgtcatgagttccttcacttttttttactcattgcttttttttttaagtggcagCCTTCCACTGACCATTCTGGCAGTAGTGAAAACATGAAAGGTCAAAGGTTTCGGTCTGGGAACTATACCTCATCTGAGCCTGCTCCTACAAAGCTTGTTG

Basic information

species Oryza sativa
transcript LOC_Os01g22390.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665170|gb|CK053856.1|CK053856
EST:     TACATGGTTTCTATTAGAGCAAGCTCTTCAAAGATTGTCATGGCTGGAAG                         CCTTCCACTGACCATTCTGGCAGTAGTGAAAACATGAAAGGTCAAAGG
genomic: TACATGGTTTCTATTAGAGCAAGCTCTTCAAAGATTGT-ATGGCTGGAAGgtatggaagg ... taagtggcagCCTTCCACTGACCATTCTGGCAGTAGTGAAAACATGAAAGGTCAAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcatgagttccttcacttttttttactcattgcttttttttttaagtggcagCCTTCCACTGACCATTCTGGCAGTAGTGAAAACATGAAAGGTCAAAGGTTTCGGTCTGGGAACTATACCTCATCTGAGCCTGCTCCTACAAAGCTTGTTG
          ttccttcacttttttt  CT-rich tract
                   ttttttttactcattg  TA-rich tract