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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcattgttagaaatccttctctttgttttagtggttgtagctttttggttgtagttctgacatgattgtattttttttttcgcatctcctggtattgcagATTGCATCTGATGGGGCTGAGGAATGTAATGGGAG

Basic information

species Oryza sativa
transcript LOC_Os01g22390.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88340963|gb|CI638519.1|CI638519
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCCTCCAG                         ATTGCATCTGATGGGGCTGAGGAATGTAATGGGAG
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGAGGAATGTAATGGGAG
EST: gi|88354097|gb|CI636295.1|CI636295
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAC                         ATTGCATCTGATGGGGCTGA
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGA
EST: gi|88330251|gb|CI658560.1|CI658560
EST:     ACGGCCTCCACGACTCCCCTCTCCCCTTCCCCTCCGCCGCCGTCGTCCAG                         ATTGCATCTGATGGGGCTGAGGAATGTAA
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGAGGAATGTAA
EST: gi|88349016|gb|CI654060.1|CI654060
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAG                         ATTGCATCTGATGGGGCTGAGGAATGT
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGAGGAATGT
EST: gi|88393107|gb|CI616591.1|CI616591
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAG                         ATTGCATCTGATGGGGCTGAGGAATGTAATGGG
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGGGCTGAGGAATGTAATGGG
EST: gi|88340108|gb|CI650555.1|CI650555
EST:     ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAG                         ATTGCATCTGATGGG
genomic: ACGGCCTCCACGAGTCCCCTCTCCCCTTCGCCTCCGCCGCCGTCGTCCAGgtctttccgc ... ggtattgcagATTGCATCTGATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgtagttctgacatgattgtattttttttttcgcatctcctggtattgcagATTGCATCTGATGGGGCTGAGGAATGTAATGGGAG
         ttctgac  putative branch site (score: 2)
                         ttttttttttcgcatc  putative PPT
              acatgattgtattttt  TA-rich tract