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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagacaaacatttttttttgcccatattctgcatacctgttacatttcgtgtataatcctaagtatcttgtagatttctaacacttcccctgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGCGTAACACACGAAGGCGATAACCTCTACATGCAGGCACCTGAAGTCCTAG

Basic information

species Oryza sativa
transcript LOC_Os01g16540.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g16540.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G007915_T02 (Zea mays), 3'ss of exon 8
aagacaaacatttttttttgcccatattctgcatacctgttacatttcgtgtataatcctaagtatct----tgtagatt-tctaacac---ttcccctgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGCGTAACACACGAAGGCGATAACCTCTACATGCAGGCACCTGAAGTCCTAG
          | |  | ||    ||   ||  | |     || |  | || |   |   ||  |||||    | | |  | |||||  |   ||  ||||||  |||||||||||||||||||||||||||||||||| |||  |||||||  || ||||| || ||||||||  | ||||| ||||||||| |||| || || || |
--------ggtgtcatgttatatatgagctaaagagtaactataaatggtttcgtactttatttatctgctgtttggtctgtctaaagcctgtttgcctgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6799296|gb|AU082247.1|AU082247
EST:     GTGGACCTGGTACCCTTNTTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCNCCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86499320|gb|CI141953.1|CI141953
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88265054|gb|CI368828.1|CI368828
EST:     ACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: ACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|186893094|gb|FG124779.1|FG124779
EST:     ACCCTTATTGAACTTGGAACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|186892915|gb|FG124583.1|FG124583
EST:     ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|6799264|gb|AU082215.1|AU082215
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88962036|gb|CI097189.1|CI097189
EST:     AACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: AACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88957001|gb|CI095051.1|CI095051
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTTATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88995589|gb|CI022912.1|CI022912
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|58596703|gb|CK007231.1|CK007231
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|186892910|gb|FG124578.1|FG124578
EST:     ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAGGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTGGC
genomic: ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86603130|gb|CI357494.1|CI357494
EST:     T-GAGCCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTT-AAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: TGGA-CCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86890063|gb|CI320052.1|CI320052
EST:     GTGGACCTGGTACCCTTATTGAACTT-GGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86852606|gb|CI321726.1|CI321726
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86260414|gb|CI066287.1|CI066287
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACGTCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88844602|gb|CI020449.1|CI020449
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88259418|gb|CI363711.1|CI363711
EST:     CTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: CTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88906756|gb|CI375828.1|CI375828
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCGCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88903448|gb|CI088986.1|CI088986
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86490491|gb|CI133124.1|CI133124
EST:     CATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: CATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|186893091|gb|FG124776.1|FG124776
EST:     ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|186892912|gb|FG124580.1|FG124580
EST:     ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88259509|gb|CI363802.1|CI363802
EST:     TGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: TGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|15858734|gb|BI811546.1|BI811546
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|88962230|gb|CI097383.1|CI097383
EST:     TGGACCTGGTACCCTTATTGAACTTGGGACATCGACTTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: TGGACCTGGTACCCTTATTGAACTTGGGACATCGAC-TACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86420887|gb|CI056876.1|CI056876
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86492554|gb|CI135187.1|CI135187
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|89173666|gb|CI041559.1|CI041559
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86854593|gb|CI258886.1|CI258886
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86428975|gb|CI075656.1|CI075656
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86825193|gb|CI358315.1|CI358315
EST:     CATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: CATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86426268|gb|CI071365.1|CI071365
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86434920|gb|CI106153.1|CI106153
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|186892911|gb|FG124579.1|FG124579
EST:     ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86412974|gb|CI067379.1|CI067379
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86429309|gb|CI075990.1|CI075990
EST:     GGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|186893090|gb|FG124775.1|FG124775
EST:     TACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: TACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|86893103|gb|CI333403.1|CI333403
EST:     GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: GTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
EST: gi|186893093|gb|FG124778.1|FG124778
EST:     ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAG                         TTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC
genomic: ACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 69 (downstream exon)
Score: 36

AACACACATTAATGTAAGCGAATTTGCAAGAGAGAAAGACTGCCTTGTATGTGGACCTGGTACCCTTATTGAACTTGGGACATCGACTACCCTCTCAGAGgtcagtaata ... tgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGCGTAACACACGAAGGCGATAACCTCTACATGCAGGCACCTGAAGTCCTAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtgtataatcctaagtatcttgtagatttctaacacttcccctgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGCGTAACACACGAAGGCGATAACCTCTACATGCAGGCACCTGAAGTCCTAG
                                    cacttcccct  CT-rich tract
                            atttctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagacaaacatttttttttgcccatattctgcatacctgttacatttcgtgtataatcctaagtatcttgtagatttctaacacttcccctgataaacagTTCATCAAGATGCTTGAAGAGCACCCCAAGCTGCTAATGTCGAGGGCTAGCGTAACACACGAAGGCGATAACCTCTACATGCAGGCACCTGAAGTCCTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- -acaaaca
- - - - - - - tttttgc
- - - - - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - ctgttac