1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgctttacttcatgacatggaatttattttatctctggtttctctctaatctttttcctcattgtaatacagGCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAG
species | Oryza sativa |
transcript | LOC_Os01g16540.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG GCTTTAAAGAGAGCAGAACTEST: gi|27554355|gb|CA998255.1|CA998255
genomic: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAGgtttgcttta ... tgtaatacagGCTTTAAAGAGAGCAGAACT
EST: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG GCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTEST: gi|58596703|gb|CK007231.1|CK007231
genomic: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAGgtttgcttta ... tgtaatacagGCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTT
EST: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG GCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTEST: gi|58653339|gb|CK042019.1|CK042019
genomic: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAGgtttgcttta ... tgtaatacagGCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTT
EST: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG GCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTEST: gi|325493432|gb|JG457956.1|JG457956
genomic: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAGgtttgcttta ... tgtaatacagGCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTT
EST: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG GCTTTACAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTT
genomic: AACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAGgtttgcttta ... tgtaatacagGCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTT
tggaatttattttatctctggtttctctctaatctttttcctcattgtaatacagGCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAG
ctctaat putative branch site (score: 31)
tttctctctaatcttt CT-rich tract
tttattttatctct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctttacttcatgacatggaatttattttatctctggtttctctctaatctttttcctcattgtaatacagGCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG