1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAGgtgtctctctaatcttgtgccttctctgctagtgatttaatgcgaatcttgtactctggtaataatgcatgagtcctataatcacaccaacttcaacctt...
species | Oryza sativa |
transcript | LOC_Os01g16540.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTTTTNGGNATTTCCTGAAGTTACATATTCGTTTACCCAG GGTGTTGTCAAGAATATCATCCCAGCCATTGTTTCAACAAATGCAATTGTTEST: gi|58596703|gb|CK007231.1|CK007231
genomic: CTTTTTGGTATTT-CTGGAGTTACATATTCGTTTACCCAGgtgtctctct ... tgaattacagGGTGTTGTCAAGAATATCATCCCAGCCATTGCTTCAACAAATGCAATTGTT
EST: AGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAG GGNTGTTGTCANAGAATATCATCCCAGCCATTGCTTCAACAAATGCAATTGEST: gi|86854593|gb|CI258886.1|CI258886
genomic: AGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAGgtgtctctct ... tgaattacagGG-TGTTGTCA-AGAATATCATCCCAGCCATTGCTTCAACAAATGCAATTG
EST: ATTTCTGGAGTTACATATTCGTTTACCCAG GGTGTTGTCAAGAATATCATCCCAGCCATTGCTTCAACAAATGCAATTGTTEST: gi|58653339|gb|CK042019.1|CK042019
genomic: ATTTCTGGAGTTACATATTCGTTTACCCAGgtgtctctct ... tgaattacagGGTGTTGTCAAGAATATCATCCCAGCCATTGCTTCAACAAATGCAATTGTT
EST: AGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAG GGTGTTGTCAAGAATATCATCCCAGCCATTGCTTCAACAAATGCAATTGTTEST: gi|325493432|gb|JG457956.1|JG457956
genomic: AGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAGgtgtctctct ... tgaattacagGGTGTTGTCAAGAATATCATCCCAGCCATTGCTTCAACAAATGCAATTGTT
EST: AGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAG AGTGTTGTCAAGAATATCATCCCAGACATTGCTTCAACAAATGCAATTGTA
genomic: AGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAGgtgtctctct ... tgaattacagGGTGTTGTCAAGAATATCATCCCAGCCATTGCTTCAACAAATGCAATTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTAAAGAGAGCAGAACTTTTTGGTATTTCTGGAGTTACATATTCGTTTACCCAGgtgtctctctaatcttgtgccttctctgctagtgatttaatgcgaatcttgtactctggtaataatgcatgagtcctataatcacaccaacttcaacctt
- - - - AGAGCA
- - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctct