1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactgttctagtttctgtataattgctctttgaactcctccccccccccccccccccccaataattaaagtcactcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG
species | Oryza sativa |
transcript | LOC_Os01g16540.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAG GTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGEST: gi|27554355|gb|CA998255.1|CA998255
genomic: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAGgtactgttct ... actcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGG
EST: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAG GTTCATCCTGNGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGEST: gi|58653339|gb|CK042019.1|CK042019
genomic: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAGgtactgttct ... actcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGG
EST: GAACTGCAGGTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAG GTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGEST: gi|325493432|gb|JG457956.1|JG457956
genomic: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAGgtactgttct ... actcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGG
EST: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAG GTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGEST: gi|66915301|gb|CX102149.1|CX102149
genomic: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAGgtactgttct ... actcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGG
EST: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAG GTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGG
genomic: GAACTGCAGCTCATTGCATTGAATATGCTCATTTGATCAAATGGAATGAGgtactgttct ... actcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGG
ctttgaactcctccccccccccccccccccccaataattaaagtcactcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG
tcactctt CT-rich tract
aataattaaagtca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgttctagtttctgtataattgctctttgaactcctccccccccccccccccccccaataattaaagtcactcttgtagGTTCATCCTGGGAAACCTTTTGATGCTGATGATGCAGAACATATGCAGTGGATTTACTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA