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...agtgatgagtcctacttctgcacatagcaatacatgatgcatttataatgttatccagcagcaaccctaatactttgcttggtcatgttttctttcctagAAATCCCTTCATGATCCAATCGCATTCAGAAAAGAAATGGATGGAATAACAGTGGATGTTTCCCTTCAATG
species | Oryza sativa |
transcript | LOC_Os01g16290.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTATGCTGGTGGTCTGGTTGAGTATGTTAAATGGTTGAATACTGACAAG AAATCCCTTCATGATCCAATCGCATTCAGAAAAGAAATGGATGGAATAACAEST: gi|58688095|gb|CK076782.1|CK076782
genomic: GTTATGCTGGTGGTCTGGTTGAGTATGTTAAATGGTTGAATACTGACAAGgtttgacctg ... tctttcctagAAATCCCTTCATGATCCAATCGCATTCAGAAAAGAAATGGATGGAATAACA
EST: GTTATGCTGGTGGTCTGGTTGAGTATGTTAAATGGTTGAATACTGACAAG AAATCCCTTCATGATCCAATCGCATTCAGAAAAGAAATGGATGGAATAACA
genomic: GTTATGCTGGTGGTCTGGTTGAGTATGTTAAATGGTTGAATACTGACAAGgtttgacctg ... tctttcctagAAATCCCTTCATGATCCAATCGCATTCAGAAAAGAAATGGATGGAATAACA
taatgttatccagcagcaaccctaatactttgcttggtcatgttttctttcctagAAATCCCTTCATGATCCAATCGCATTCAGAAAAGAAATGGATGGAATAACAGTGGATGTTTCCCTTCAATG
ccctaat putative branch site (score: 16)
tcatgttttctttcct putative PPT
taatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgatgagtcctacttctgcacatagcaatacatgatgcatttataatgttatccagcagcaaccctaatactttgcttggtcatgttttctttcctagAAATCCCTTCATGATCCAATCGCATTCAGAAAAGAAATGGATGGAATAACAGTGGATGTTTCCCTTCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
-gtgatga
- - - - - - - cttctgc
- - - - - - - - - - - - -agcaata
- - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt