1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...gttttaaatggcaactgtccataccatattatgatggcagatgctgatactatgaaccataaaaggcatgttttccgttctaacactactgtctatgcagAAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTACAAG
species | Oryza sativa |
transcript | LOC_Os01g16290.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGCACATATCCGGACTCTTCTCCTTACTTTCTTCTTTAGATATCAG AAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTACEST: gi|66923153|gb|CX110001.1|CX110001
genomic: ATGGTGCACATATCCGGACTCTTCTCCTTACTTTCTTCTTTAGATATCAGgtacttctac ... gtctatgcagAAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTAC
EST: ATGGTGCACATATCCGGACTCTTCTCCTTACTTTCTTCTTTAGATATCAG AAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGCGCCTCCTCTTTACEST: gi|218495419|gb|FG960500.1|FG960500
genomic: ATGGTGCACATATCCGGACTCTTCTCCTTACTTTCTTCTTTAGATATCAGgtacttctac ... gtctatgcagAAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTAC
EST: ATGGTGCACATATCCGGACTCTTCTCCTTACTTTCTTCTTTAGATATCAG AAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTACEST: gi|89185707|gb|CI047576.1|CI047576
genomic: ATGGTGCACATATCCGGACTCTTCTCCTTACTTTCTTCTTTAGATATCAGgtacttctac ... gtctatgcagAAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTAC
EST: ATGGTGCACATATCCGGACTCTTCTCCTTACTTTCTTCTTTAGATATCAG AAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTAC
genomic: ATGGTGCACATATCCGGACTCTTCTCCTTACTTTCTTCTTTAGATATCAGgtacttctac ... gtctatgcagAAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTAC
gatactatgaaccataaaaggcatgttttccgttctaacactactgtctatgcagAAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTACAAG
ttctaac putative branch site (score: 24)
ataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttaaatggcaactgtccataccatattatgatggcagatgctgatactatgaaccataaaaggcatgttttccgttctaacactactgtctatgcagAAAGCACTATTCGATGAAGGTTGCATTTATGTTGGTGTGCCTCCTCTTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - gcaactg
- - - - - - - - - ccatacc
- - - - - - - - - - - - - - - -tgatggc
- - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -accataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggcatg