1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtttcttgtcttggcttgaatatgtttatctgttgatcaacagcaatgaaaacatcatgtttttgattgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCCAAAATTAGTTTTACCTTCTCTATGTGGGGAAGATGGAGGCTGTTTAAAC
species | Oryza sativa |
transcript | LOC_Os01g13470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGG GCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCCEST: gi|29667701|gb|CB663976.1|CB663976
genomic: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGGgtttgtttct ... tgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCC
EST: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGG GCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCCEST: gi|88841790|gb|CI081046.1|CI081046
genomic: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGGgtttgtttct ... tgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCC
EST: ATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGG GCCTGGTCAGCNATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCCEST: gi|29630172|gb|CB635181.1|CB635181
genomic: ATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGGgtttgtttct ... tgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCC
EST: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGG GCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCCEST: gi|29621900|gb|CB626911.1|CB626911
genomic: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGGgtttgtttct ... tgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCC
EST: TTGCCTGATATCNCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGG GCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCCEST: gi|29627204|gb|CB632215.1|CB632215
genomic: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGGgtttgtttct ... tgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCC
EST: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGG GCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCC
genomic: TTGCCTGATATCCCAGGAATGGCGCATAGAGGAATGGGTGGATTTCCTGGgtttgtttct ... tgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCC
tgtttatctgttgatcaacagcaatgaaaacatcatgtttttgattgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCCAAAATTAGTTTTACCTTCTCTATGTGGGGAAGATGGAGGCTGTTTAAAC
ttttgat putative branch site (score: 12)
tttttgattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttcttgtcttggcttgaatatgtttatctgttgatcaacagcaatgaaaacatcatgtttttgattgtattgcagGCCTGGTCAGCCATCTATCGTATCAACCATAACTGCAGATGTCATGGTCCCAAAATTAGTTTTACCTTCTCTATGTGGGGAAGATGGAGGCTGTTTAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT