1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAATATCAAGTCTATTCAGAATGATACAGGCTGTGAAATAAAGGTTCTTGATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCGgtaaccagcttctttccctcttgataatattcgtttgatcaatatcagtttagtccatttgtaacctgctttgtagtagctagtagcccattagtcctag...
species | Oryza sativa |
transcript | LOC_Os01g13470.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCG CATCCGGGTGATGGAATTTCCCEST: gi|58665647|gb|CK054333.1|CK054333
genomic: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCGgtaaccagct ... tattctgtagCATCCGGGTGATGGAATTTCCC
EST: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCG CATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAGEST: gi|33662880|gb|CF293847.1|CF293847
genomic: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCGgtaaccagct ... tattctgtagCATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAG
EST: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCG CATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAG
genomic: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCGgtaaccagct ... tattctgtagCATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATATCAAGTCTATTCAGAATGATACAGGCTGTGAAATAAAGGTTCTTGATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCGgtaaccagcttctttccctcttgataatattcgtttgatcaatatcagtttagtccatttgtaacctgctttgtagtagctagtagcccattagtcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA