1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttagctctgagcaatcttattattactgtctagtgtgttctcaagatagatagccactgatgactaatgtattcaaattcatttgtctctattctgtagCATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAGCGTAAAATTGTACCGACCTCCAACACCAAGGAGGGTCCTGCGATATGTA
species | Oryza sativa |
transcript | LOC_Os01g13470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCG CATCCGGGTGATGGAATTTCCCEST: gi|58665647|gb|CK054333.1|CK054333
genomic: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCGgtaaccagct ... tattctgtagCATCCGGGTGATGGAATTTCCC
EST: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCG CATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAGEST: gi|33662880|gb|CF293847.1|CF293847
genomic: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCGgtaaccagct ... tattctgtagCATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAG
EST: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCG CATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAG
genomic: ATACTGTTCCAAAATCTGAAGATCGCATCGTATTTATCTCAGGACCTGCGgtaaccagct ... tattctgtagCATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAG
gatagatagccactgatgactaatgtattcaaattcatttgtctctattctgtagCATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAGCGTAAAATTGTACCGACCTCCAACACCAAGGAGGGTCCTGCGATATGTA
gactaat putative branch site (score: 14)
tttgtctctattct putative PPT
taatgtattcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttagctctgagcaatcttattattactgtctagtgtgttctcaagatagatagccactgatgactaatgtattcaaattcatttgtctctattctgtagCATCCGGGTGATGGAATTTCCCCTGCACAGAATGCAATTCTGCATGTGCAGCGTAAAATTGTACCGACCTCCAACACCAAGGAGGGTCCTGCGATATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatga