1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCTCCCGTCTCGTCTCCTCCGCTCTTGCGCCATCTTGCGGCTGAACAGGGGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatccacatcctctttctgattcatctctctcccaccgggtgtgctttcgtttggaatttgcttgcgtaaaccctagcttgattcatctctctct...
species | Oryza sativa |
transcript | LOC_Os01g13470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTG GCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAAEST: gi|86832082|gb|CI305308.1|CI305308
genomic: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatcc ... ttgtgttcagGCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAA
EST: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTG GCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAAEST: gi|88317152|gb|CI626795.1|CI626795
genomic: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatcc ... ttgtgttcagGCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAA
EST: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTG GCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAAEST: gi|86902436|gb|CI304255.1|CI304255
genomic: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatcc ... ttgtgttcagGCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAA
EST: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTG GCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAAEST: gi|88727245|gb|CI750900.1|CI750900
genomic: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatcc ... ttgtgttcagGCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAA
EST: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTG GCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAAEST: gi|88728767|gb|CI752277.1|CI752277
genomic: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatcc ... ttgtgttcagGCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAA
EST: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTG GCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAAEST: gi|29667700|gb|CB663975.1|CB663975
genomic: GGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatcc ... ttgtgttcagGCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAA
EST: CCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTG GCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAA
genomic: CCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatcc ... ttgtgttcagGCAGGGGAAGACATGGCTTCACGCTCGACGCCTTCGAAGAGGCCGTTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTCCCGTCTCGTCTCCTCCGCTCTTGCGCCATCTTGCGGCTGAACAGGGGAGGGGCGCCGACCTCCATCTGGCGAGCAGGGGAGGGGAGGGGATTCTGgtgagcatccacatcctctttctgattcatctctctcccaccgggtgtgctttcgtttggaatttgcttgcgtaaaccctagcttgattcatctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaccg