1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatttttcagaattggatttcattatcttgttctctactggtccttttgtaatatatctgttagattttgcatcagaaaatcattacatactcccttcatatatcatttcttcagATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAGTTGCTATTTACTCATCCTCCTAAGGAGAGTGATGTTCTTGGTGCTCATA
species | Oryza sativa |
transcript | LOC_Os01g13470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGACGAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAG ATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAGEST: gi|29623428|gb|CB628439.1|CB628439
genomic: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAGgtaatttttc ... atttcttcagATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAG
EST: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAG ATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAGEST: gi|29630171|gb|CB635180.1|CB635180
genomic: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAGgtaatttttc ... atttcttcagATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAG
EST: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAG ATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAGEST: gi|33662880|gb|CF293847.1|CF293847
genomic: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAGgtaatttttc ... atttcttcagATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAG
EST: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAG ATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAGEST: gi|29627203|gb|CB632214.1|CB632214
genomic: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAGgtaatttttc ... atttcttcagATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAG
EST: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAG ATCACTGGAGAGCTCGACTCAGTCANGAAAGGTCTGAATAC
genomic: CAAAGGACAAGCTTCCATTATGTGCTTTACCCCGAGATGAACTTTGCCAGgtaatttttc ... atttcttcagATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATAC
ttagattttgcatcagaaaatcattacatactcccttcatatatcatttcttcagATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAGTTGCTATTTACTCATCCTCCTAAGGAGAGTGATGTTCTTGGTGCTCATA
tcatttcttc CT-rich tract
aaaatcattacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttttcagaattggatttcattatcttgttctctactggtccttttgtaatatatctgttagattttgcatcagaaaatcattacatactcccttcatatatcatttcttcagATCACTGGAGAGCTCGACTCAGTCAGGAAAGGTCTGAATACAGTTGCTCAGTTGCTATTTACTCATCCTCCTAAGGAGAGTGATGTTCTTGGTGCTCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA