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...gtatccactttcatactgctaccagaaataacattattagctatataatgtttgactaatgttttgttctaatctgatttatggttcttggtatttctagGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG
species | Oryza sativa |
transcript | LOC_Os01g07910.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCAGG-TGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAG GTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGEST: gi|88238022|gb|CI237871.1|CI237871
genomic: TGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAGgtctgttgcc ... gtatttctagGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGG
EST: TGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAG GTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGEST: gi|163928246|gb|EG714638.1|EG714638
genomic: TGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAGgtctgttgcc ... gtatttctagGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGG
EST: TGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAG GTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGEST: gi|58586540|gb|CF984848.1|CF984848
genomic: TGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAGgtctgttgcc ... gtatttctagGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGG
EST: TGCGGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAG GTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGEST: gi|218488269|gb|FG947104.1|FG947104
genomic: TGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAGgtctgttgcc ... gtatttctagGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGG
EST: TGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAG GTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGG
genomic: TGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAGgtctgttgcc ... gtatttctagGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGG
taatgtttgactaatgttttgttctaatctgatttatggttcttggtatttctagGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG
tatttct CT-rich tract
taatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccactttcatactgctaccagaaataacattattagctatataatgtttgactaatgttttgttctaatctgatttatggttcttggtatttctagGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG
- - - -ctttcat
- - - - - - - - tgctacc
- - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttct