1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtagtctttgtcatttctgcttatagttctgctgatattctttaagcttttgacaagagtttgtacaattttaaagctcgcttataatctccatcaacattatcttcattcatgtgtagcataaacatgattattaatgttggaatgtaagaaagcatcagtcattcaatggtttttgcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAG
species | Oryza sativa |
transcript | LOC_Os01g07910.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATTGCCTTGAAAGGTTTGCCACGGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCAAATATCCGGTGACAAGGCAAAGEST: gi|86866447|gb|CI343418.1|CI343418
genomic: CATTGCCTTGAAAGGTTTGCCAC-GGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|88238022|gb|CI237871.1|CI237871
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|86420283|gb|CI056272.1|CI056272
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|163927043|gb|EG715166.1|EG715166
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: CTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|86824941|gb|CI358146.1|CI358146
genomic: CTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: GCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGCTGAC-AGGCAAAGEST: gi|88507988|gb|CI435494.1|CI435494
genomic: GCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|88376370|gb|CI535474.1|CI535474
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|163928246|gb|EG714638.1|EG714638
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|89184292|gb|CI046857.1|CI046857
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|88485015|gb|CI422286.1|CI422286
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: CCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|88463003|gb|CI522114.1|CI522114
genomic: CCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|27554208|gb|CA998108.1|CA998108
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|88319567|gb|CI518411.1|CI518411
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|86546020|gb|CI186226.1|CI186226
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: GGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|86250752|gb|CI007615.1|CI007615
genomic: GGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGACAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|58586540|gb|CF984848.1|CF984848
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATGGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGEST: gi|86494415|gb|CI137048.1|CI137048
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGEST: gi|88485354|gb|CI422625.1|CI422625
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
EST: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTT GTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
genomic: ACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTgtgagtagtc ... gcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAG
attaatgttggaatgtaagaaagcatcagtcattcaatggtttttgcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAG
tattaat putative branch site (score: 8)
tttttgctt putative PPT
aatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagtctttgtcatttctgcttatagttctgctgatattctttaagcttttgacaagagtttgtacaattttaaagctcgcttataatctccatcaacattatcttcattcatgtgtagcataaacatgattattaatgttggaatgtaagaaagcatcagtcattcaatggtttttgcttggtcagGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG