1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttggtattactacagggtttaattcattttgatctgattacatgggatttttttgttagtgtaacacgccctggtaatttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGG
species | Oryza sativa |
transcript | LOC_Os01g07910.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTC-AG GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCEST: gi|88238022|gb|CI237871.1|CI237871
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCEST: gi|88507988|gb|CI435494.1|CI435494
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCEST: gi|163928246|gb|EG714638.1|EG714638
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCEST: gi|88463003|gb|CI522114.1|CI522114
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: AGACTTGCCAGTAGCTATCCTAATTTCAAG GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCEST: gi|88319567|gb|CI518411.1|CI518411
genomic: AGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: GTAGCTATCCTAATTTCAAG GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCEST: gi|58586540|gb|CF984848.1|CF984848
genomic: GTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG GTATTCTACACGGTGGACAAACCATCAAATGACTGGAGGGGTGGTGTTGGCEST: gi|86494415|gb|CI137048.1|CI137048
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCEST: gi|218488269|gb|FG947104.1|FG947104
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG GTATTCTACACGGTGGACAAACCATCAAATGACTGGAAGGGTGGTGTTGGCEST: gi|88485354|gb|CI422625.1|CI422625
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: GCCAGTAGCTATCCTAATTTCAAG GTATTTTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: GCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
ctgattacatgggatttttttgttagtgtaacacgccctggtaatttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGG
gtgtaac putative branch site (score: 33)
tttttctct putative PPT
atttttttgttagt TA-rich tract