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gtaagacatgacttcaaccttagccaagtgtctatgtttgccaattcaatttagcaagcccaaagctagaaaaattctgaagttatcaagctggtctttttttttaaaaaattttaacaaaatgtatgtatatgctttcagATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAG
species | Oryza sativa |
transcript | LOC_Os01g07910.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCCCAAATATGAAGAAACAAATTGGCATG ATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCEST: gi|58586540|gb|CF984848.1|CF984848
genomic: AGCCCAAATATGAAGAAACAAATTGGCATGgtaagacatg ... atgctttcagATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATC
EST: CCATTGAAAAGCTCAGATATAGCCCAAATATGAAGAAACAAATTGGCATG ATCGCTGGTGGGACTGGCATAACACCAATGCGGCAGGTTGTCAGGGCTATCEST: gi|218488269|gb|FG947104.1|FG947104
genomic: CCATTGAAAAGCTCAGATATAGCCCAAATATGAAGAAACAAATTGGCATGgtaagacatg ... atgctttcagATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATC
EST: CCATTGAAAAGCTCAGATATAGCCCAAATATGAAGAAACAAATTGGCATG ATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATC
genomic: CCATTGAAAAGCTCAGATATAGCCCAAATATGAAGAAACAAATTGGCATGgtaagacatg ... atgctttcagATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATC
caagctggtctttttttttaaaaaattttaacaaaatgtatgtatatgctttcagATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAG
ttttaac putative branch site (score: 5)
tgctttc putative PPT
tctttttttttaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacatgacttcaaccttagccaagtgtctatgtttgccaattcaatttagcaagcccaaagctagaaaaattctgaagttatcaagctggtctttttttttaaaaaattttaacaaaatgtatgtatatgctttcagATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG