Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtattactacagggtttaattcattttgatctgattacatgggatttttttgttagtgtaacacgccctggtaatttttctctag

Basic information

species Oryza sativa
transcript LOC_Os01g07910.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86866447|gb|CI343418.1|CI343418
EST:     TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTC-AG                         GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|88238022|gb|CI237871.1|CI237871
EST:     TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG                         GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|88507988|gb|CI435494.1|CI435494
EST:     TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG                         GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|163928246|gb|EG714638.1|EG714638
EST:     TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG                         GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|88463003|gb|CI522114.1|CI522114
EST:     AGACTTGCCAGTAGCTATCCTAATTTCAAG                         GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: AGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|88319567|gb|CI518411.1|CI518411
EST:     GTAGCTATCCTAATTTCAAG                         GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: GTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|58586540|gb|CF984848.1|CF984848
EST:     TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG                         GTATTCTACACGGTGGACAAACCATCAAATGACTGGAGGGGTGGTGTTGGC
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|86494415|gb|CI137048.1|CI137048
EST:     TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG                         GTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|218488269|gb|FG947104.1|FG947104
EST:     TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAG                         GTATTCTACACGGTGGACAAACCATCAAATGACTGGAAGGGTGGTGTTGGC
genomic: TGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
EST: gi|88485354|gb|CI422625.1|CI422625
EST:     GCCAGTAGCTATCCTAATTTCAAG                         GTATTTTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC
genomic: GCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 60 (upstream exon), 69 (downstream exon)
Score: 33

GTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGgttggtatta ... ttttctctagGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGG




<











<


<