Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaaacatcaaatatttatgatcggagggaacattacttataaaatgctcttcacactgcagtcttgatctgttaaccaaccgtgcttcttgctttcagATGATGTGGGCTGCTGACTTTAATGAAGATGTGATTTTACATTTGGAAGAGAATTGTCTGGAGCCATTGCTGGTAGATATGAGGAATGATTTATCATGTG

Basic information

species Oryza sativa
transcript LOC_Os01g01010.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01010.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G031043_T01 (Zea mays), 3'ss of exon 9
----tctaaacatcaaatatttatga-tcggagggaacattacttataaaatgctcttcacactgcagtcttgatctgttaaccaaccgtgcttcttgctttcagATGATGTGGGCTGCTGACTTTAATGAAGATGTGATTTTACATTTGGAAGAGAATTGTCTGGAGCCATTGCTGGTAGATATGAGGAATGATTTATCATGTG
    || | |    |   || |  ||  |  ||||    |  ||| |   ||     |   |    | ||||| | ||||   |||  |   ||||||  |||||||||||||||||||||| ||| ||||||| |   |    ||||| |||||||| || || || |||||||| |||||| |||| ||||  ||||||| ||
tttttccagaacctactcatgtgggagcctcagggtctgtccctttttgtat---tattgaatcagaatcttgttatgtttgacaaatggtgttcttg--ttcagATGATGTGGGCTGCTGATTTTGATGAAGAAGCAGTCAGGCATTTAGAAGAGAACTGCCTAGAACCATTGCTAGTAGATCTGAGCAATGGCTTATCATCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctcttcacactgcagtcttgatctgttaaccaaccgtgcttcttgctttcagATGATGTGGGCTGCTGACTTTAATGAAGATGTGATTTTACATTTGGAAGAGAATTGTCTGGAGCCATTGCTGGTAGATATGAGGAATGATTTATCATGTG
                          tgttaac  putative branch site (score: 2)
                                       tgcttcttgctttc  putative PPT