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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgtatatgcatatttcagtggcatctttttttacttcctttttggtttcttgatgtgtctaaatgggataagttgctaacag

Basic information

species Oryza sativa
transcript LOC_Os01g01010.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G031043_T01 (Zea mays), 5'ss of exon 7
AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgtatatgcatatttc-agtggcatctttttttacttcctttttggt-ttcttgatgtgtctaaatgggataagttgctaacag
|| || ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| || || || |||||| |  ||||||||| ||  || |  |||| ||||    |||   | |||||||||| ||||||     |||||   ||  ||
AGCCACCTTGATTTCTATGGAGAATCAAGGAATATGGCTAGAATGTCTGATATACTTGCTGTTTATGCATGGGTTGATCCTTCCACTGGATACTGTCAAGgttt--gcatatttcgaggagccttattttgtactattatttgattattcttgatgtatctaaa-attctaagtaatta-tag

upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA15G03240.1 (Glycine max), 5'ss of exon 5
AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgtatatgcatatttcagtggcatctttttttacttcct-----ttttggtttcttgatgtgtcta----aatgggataagttgctaacag------------------------------
||||||||||| |||||||  ||    |||||| | ||||||||||||||||| ||||| || |||||||||||||||||||| || ||||||||||||||| |||   | || | | |   |  ||   | ||| ||     || || | | ||  |   ||||      ||      | ||| || |                               
AGTCATCTTGAATTCTATGAGGACAAGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACGGGGTATTGCCAAGgt-tatattttttcctgggaatttcttgacttcttgctgataattgtgttctatttgtagttctattacgctgactctggatgccaaaacttatcttttcactgaaatatttgattttag

upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA13G42150.1 (Glycine max), 5'ss of exon 5
AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgtatatgcatatttcagtggcatctt---tttttact-----tcctttttggtttcttgatgtgtctaaatgggataagttgctaacag------------------------------
||||||||||| ||||| |  ||  | |||||| | ||||||||||||||||| ||||| || |||||||||||||||||||| || ||||||||||||||| |||   | |    |     ||||   || || ||     |  | ||   ||| | |   | |   | ||      | ||| || |                               
AGTCATCTTGAATTCTACGAGGACACGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACAGGGTATTGCCAAGgt-tatttttttcctgggaatttcttgacttcttgctgatgattgtgttctatttatagtcctattacactgactctggatgccaaaacttgtcttttcactgaaatacttgtttttag

upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT2G43490.2 (Arabidopsis thaliana), 5'ss of exon 6
AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgtat-atgcatatttcagtggcatctttttttacttcctttttggtttcttgatg-tgtctaaatgggataagttgctaacag-----------------------
|| || ||||| || ||||  ||  || ||||| | |  || ||||| ||||| ||||| |||||||| |||||||||||| | || || ||||||||||||   ||  || | | |           ||  |  |    | ||    ||| |||  || | | |||  || | | |||||                         
AGCCACCTTGAGTTTTATGAGGATCCAGGAAATCTAGGAAGAATGTCGGATATCCTTGCGGTTTATGCTTGGGTTGATCCTGCAACTGGTTATTGCCAAGgtgccatatatctcttaagtttgataacttagatatgtgatatgaaaactttatgacgttttattggtttaggatactaactctctggttgcaaatctgttgatag

upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT3G59570.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgtatatgcatatttcagtggcatct--ttttttacttcctttt---tggtttcttgatgtgtctaaa-tgggataagttgctaacag-----------------------
|| || ||||| |||||||  ||  || ||||| | | ||| ||||||||||| ||||| || ||||| |||||||||||| | || || ||||||||||||     || || ||  | |  |    ||| | || |  | |     ||       ||| ||  | | |    || | | ||||| |                       
AGCCACCTTGAGTTCTATGAGGATCCAGGAAATCTAGGTAGAATGTCAGATATCCTTGCGGTCTATGCTTGGGTTGATCCTGCAACTGGTTATTGCCAAGgt---cccaaatctctcttgtgttgggtttgtaacgtgttataaaacggcgctcgtatgagttcatactaatgtaggatactaactgtctggttgcgaatctgtggacag

upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv00s0226g00160.t01 (Vitis vinifera), 5'ss of exon 6
AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgta---tatgcatatttcagtggcatctttttttacttc--------ctttttggtttcttgatgtgtctaaatgggataagttgctaacag----------------------------------------------
||||||||||| |||||||  ||  ||| |||| |||||||||||||||| || ||||| ||||||||||||||||||||| | || || || |||||||||      |  || |||| ||   | | | ||  | ||         || |||  ||  | ||    |||| ||    |   ||  ||| |                                               
AGTCATCTTGAATTCTATGAGGATCCAAAAAATTTGGCTAGGATGTCAGACATTCTTGCTGTTTATGCATGGGTTGATCCTGCAACAGGATACTGCCAAGgtggtgcctttatctttctgtttgaacctcttccagttgtatgataactattttattcatggaaagctctagataatttggttttgtaatatcagcttaaacaccaatggttacttgtgacttgaaatctgctcttag

upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv00s0226g00020.t01 (Vitis vinifera), 5'ss of exon 2
AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgtatatgcata----tttcagtggcatcttttt---ttacttcctttttggtttcttgatgtg--tcta-aatgggataagttgctaacag-------------------------------------
||||||||||| || ||||  ||  ||| |||| | |||||||||||||| || ||||| ||||||||||||||||||||  | || || || |||||||||   | | |     |||  || | | |||||    ||      |  ||  |||||| |||    || | |   || ||| ||  ||| |                                      
AGTCATCTTGAATTTTATGAGGATACAAAAAATTTAGCTAGGATGTCAGACATTCTTGCTGTTTATGCATGGGTTGATCCCGCAACAGGATACTGCCAAGgttgttcctttgtctttttggttgaaccttttccagttgtacaatgattattttcttcatggaaatccatagctggttaattttgtaatatcagctacaattacttataatttggaatcttctcttag