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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGGgtgagttaattgtttcttttgtgcttcaaaaacttgttttttcatgtattttagctgttgaagggtgtggatttttttttcagtcttaatacattacctt...

Basic information

species Oryza sativa
transcript LOC_Os01g01010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G031043_T01 (Zea mays), 5'ss of exon 4
GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGGgtgagttaattgtttcttttgtgcttcaaaaacttgttttttcatgta-ttttagctgttgaagggtgtggatttttttttca-gtcttaatacattacctt
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GGAAACAGAATGCTGAAACCAGAAAGATGGCACGCGTGTTTTGACAGTGACGGGAAGGCTATATGTTTCCGTAAAGCCCTTAAGTTCATTGTCTTAGGAgtgagttaactatatactttat--ttcaggaacttaccttttcatattctttttgttgtttcgtccttcaagctttagattcacatactagtatcagttctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675456|gb|CB671731.1|CB671731
EST:     ATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGG                         GGTGTGGATCCCACTATTCGAGCTGAAGTTTGGGAATTTCTTCTTGGCTGC
genomic: ATGGAAAGGTCATAGGTTTCCGTAAAGCCCTAAAATTCATTGTCTTAGGGgtgagttaat ... tgatgtgcagGGTGTGGATCCCACTATTCGAGCTGAAGTTTGGGAATTTCTTCTTGGCTGC