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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctactcctactctagctccatatggatatggattcgattagctgtctacattctatgccatcaatttgttttccatcacttctcattatacatc...

Basic information

species Oryza sativa
transcript LOC_Os01g01010.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G031043_T01 (Zea mays), 5'ss of exon 1
CGGTGGCCGTGCGGGCGGCGCCATGGCCAACCTCCAGCGCGGCGTTGGCTCCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctactcctactctagctccatatggatatggattcgattagctgtctacattctatgccatcaatttgttttccatcacttctcattatacatc
||| |||||  |||||||||||||||||| |||||| ||||| || |||||||| || ||||||||  |||||||||||||||| || ||||| |||||||||   ||| |   || ||      | ||   |   |    | ||||  ||    | | ||| | ||  ||| | ||   |                   
CGGCGGCCGCCCGGGCGGCGCCATGGCCAGCCTCCACCGCGGGGTGGGCTCCCTTGTTCGTGACATCAGCGACCCCTGCCTCAATCCCTCCCCAGTTAAGgttg--ctattg--acccttatagtaaattagttctg--ctgtttagtagta-gtactatatactatggatt-gcttgatag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29635202|gb|CB640211.1|CB640211
EST:     CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG                         GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTT
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTT
EST: gi|29675456|gb|CB671731.1|CB671731
EST:     CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAG                         GGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT
genomic: CCCTCGTCCGTGACATTGGCGACCCCTGCCTCAACCCATCCCCCGTTAAGgttcgcctac ... aattgtgcagGGGAGCAAAATGCTCAAACCGGAAAAATGGCACACATGTTTTGATAATGAT