1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGGAGTCCTCGCTGAGGAAGCTTTGGATCCACGACGCAGCTATGGCCTCCCCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcccatcccttcgattccctactccctcccccgattgatttgatttgatttgatttaattcgattgcctgcttttcag
species | Oryza sativa |
transcript | LOC_Os01g01010.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAG GTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCEST: gi|88727805|gb|CI749607.1|CI749607
genomic: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcc ... tgcttttcagGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCC
EST: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAG GTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGGTCC-TAATCEST: gi|88388967|gb|CI595201.1|CI595201
genomic: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcc ... tgcttttcagGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTG-TCCCTAATC
EST: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAG GTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCEST: gi|88904337|gb|CI711645.1|CI711645
genomic: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcc ... tgcttttcagGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCC
EST: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAG GTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGGTCCCTAATCEST: gi|88404044|gb|CI601454.1|CI601454
genomic: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcc ... tgcttttcagGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTG-TCCCTAATC
EST: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGAATAGGTAGGCTTC-TAG GTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCEST: gi|29635202|gb|CB640211.1|CB640211
genomic: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcc ... tgcttttcagGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCC
EST: CGCCCACCAGGCCGCGCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAG GTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCCEST: gi|88314509|gb|CI606577.1|CI606577
genomic: CGCCCACCAGGCCGC-CAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcc ... tgcttttcagGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCC
EST: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAG GTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCC
genomic: CCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcc ... tgcttttcagGTCGCATGCATCATCAGATTTCAATCTCCCTTCGTTCCCTGTCCCTAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGTCCTCGCTGAGGAAGCTTTGGATCCACGACGCAGCTATGGCCTCCCCGCCCACCAGGCCGCCAGCCACAACCAGCTGACTAGGTAGGCTTCCTAGgtagggatcccatcccttcgattccctactccctcccccgattgatttgatttgatttgatttaattcgattgcctgcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA