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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGCACCTGATTCAAGGAATTGGTGCTGGTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctcaacactaaaacattggcattcagttttcagttttgatccaaaaactggctacttccttttatttagattaatctctctctttgctgaatag...

Basic information

species Glycine max
transcript GLYMA20G37280.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409405|gb|EV279213.1|EV279213
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|254338247|gb|GR849772.1|GR849772
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|254338389|gb|GR845639.1|GR845639
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|254340199|gb|GR858324.1|GR858324
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|254348058|gb|GR854307.1|GR854307
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|254338390|gb|GR845640.1|GR845640
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|308098448|gb|HO760189.1|HO760189
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|254338246|gb|GR849771.1|GR849771
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|208279577|gb|GE074134.1|GE074134
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|5820065|gb|AI988271.1|AI988271
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|58019268|gb|CX706010.1|CX706010
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|58024841|gb|CX711582.1|CX711582
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
EST: gi|58019608|gb|CX706350.1|CX706350
EST:     GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAG                         GTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA
genomic: GTATCATTCCCAAAGTTCTGGATGTAAATCTCCTAGATGAAGTTATTCAGgtagctctca ... tgaactgcagGTTTCAAGTGAAGAGGCTATAGAAACTGCTAAGCTGCTTGCCTTGAAAGAA