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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtgctaaagatatattttttacatatctggattttggagtggagattctttgtgtggcatcaggcctgtaataataccgctatgcacttctca...

Basic information

species Glycine max
transcript GLYMA20G37280.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297614|gb|FG989562.1|FG989562
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: gi|254338389|gb|GR845639.1|GR845639
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: gi|254340198|gb|GR858323.1|GR858323
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: gi|308098448|gb|HO760189.1|HO760189
EST:     GAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAGAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATT
genomic: GAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGA-AAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATT
EST: gi|17400150|gb|BM176932.1|BM176932
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
EST: gi|9259980|gb|BE348127.1|BE348127
EST:     TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG                         ACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC
genomic: TGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtg ... ggttgaaaagACTGTTCTGGTTGAGTATACAAGTGGTAACACCGGCATAGGATTGGCATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAGgttagctgtgctaaagatatattttttacatatctggattttggagtggagattctttgtgtggcatcaggcctgtaataataccgctatgcacttctca

- - - - - - - -  TTGAAG
- - - - - - - - - TGAAGA
- - - - - - - - - - AAGATG
- - - - - - - - - - -  ATGCTG