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gcatggaattccttgatttcaaaaactagagctatctggaactgtaaggttttaagattttcatttgaggatttgtaatgataatcttcttattctcaatcagGATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG
species | Glycine max |
transcript | GLYMA20G37280.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGCTGCTAAATTGGAGTACATGCAAGCGTGCTGTAGTGTCAAAGATAG GATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCEST: gi|254340198|gb|GR858323.1|GR858323
genomic: ATTGCTGCTAAATTGGAGTACATGCAAGCGTGCTGTAGTGTCAAAGATAGgcatggaatt ... tctcaatcagGATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACC
EST: ATTGCTGCTAAATTGGAGTACATGCAAGCGTGCTGTAGTGTCAAAGATAG GATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCEST: gi|308098448|gb|HO760189.1|HO760189
genomic: ATTGCTGCTAAATTGGAGTACATGCAAGCGTGCTGTAGTGTCAAAGATAGgcatggaatt ... tctcaatcagGATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACC
EST: GTACATGCAAGCGTGCTGTAGTGTCAAAGATAG GATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCEST: gi|17400150|gb|BM176932.1|BM176932
genomic: GTACATGCAAGCGTGCTGTAGTGTCAAAGATAGgcatggaatt ... tctcaatcagGATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACC
EST: ATTGCTGCTAAATTGGAGTACATGCAAGCGTGCTGTAGTGTCAAAGATAG GATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCEST: gi|9259980|gb|BE348127.1|BE348127
genomic: ATTGCTGCTAAATTGGAGTACATGCAAGCGTGCTGTAGTGTCAAAGATAGgcatggaatt ... tctcaatcagGATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACC
EST: ATTGCTGCTAAATTGGAGTACATGCAAGCGTGCTGTAGTGTCAAAGATAG GATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACC
genomic: ATTGCTGCTAAATTGGAGTACATGCAAGCGTGCTGTAGTGTCAAAGATAGgcatggaatt ... tctcaatcagGATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACC
gttttaagattttcatttgaggatttgtaatgataatcttcttattctcaatcagGATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG
tcttcttattctc CT-rich tract
atttgtaatgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatggaattccttgatttcaaaaactagagctatctggaactgtaaggttttaagattttcatttgaggatttgtaatgataatcttcttattctcaatcagGATTGCTTTGAGCATGATTGAAGATGCTGAGAAAAAAGGCCTTATTACACCTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG