Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcccaatattgagcctacattaccaagtgcaaagaacataaatgacaattctttatatatcatttaggaacaactaagttttttctttccctgatactagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA

Basic information

species Glycine max
transcript GLYMA20G36590.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207785219|gb|GD755176.1|GD755176
EST:     CGTAAGTTAAAGGATTGAGAGTGGATGCCTGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
genomic: CG-AAGTTAAAGGATTGAGAGTGGATGCCTGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatactagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
EST: gi|193707631|gb|FK647231.1|FK647231
EST:     GGATGCCTGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
genomic: GGATGCCTGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatactagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
EST: gi|305377783|gb|HO652014.1|HO652014
EST:     AGAAGTTAAAGGACTGAGAGTGGATGC-TGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGT
genomic: CGAAGTTAAAGGATTGAGAGTGGATGCCTG-TTCTGTGGAGACCAATATGgtgagtattt ... ctgatactagGTATTTATTGACATTGAAGAGGGT
EST: gi|51335732|gb|CO979598.1|CO979598
EST:     ACGAAGTTAAAGGATTGAGAGTGGATGCCTGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
genomic: ACGAAGTTAAAGGATTGAGAGTGGATGCCTGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatactagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
EST: gi|10255600|gb|BE823366.1|BE823366
EST:     GTGGATGCCTGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
genomic: GTGGATGCCTGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatactagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
EST: gi|7041697|gb|AW471538.1|AW471538
EST:     GGATGCCTGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC
genomic: GGATGCCTGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatactagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattctttatatatcatttaggaacaactaagttttttctttccctgatactagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA
                                           ccctgat  putative branch site (score: 4)
                                 ttttttctttccctga  CT-rich tract
      tttatatatcattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcccaatattgagcctacattaccaagtgcaaagaacataaatgacaattctttatatatcatttaggaacaactaagttttttctttccctgatactagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGAGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - -cctacat
- - - - - - - - - - - -caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaac