1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggcaatttgctaaattttcttttgttttaaaagtcccatcctgttgttaattgattcaaatttatagcaacattatgactcgtattttacctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTAGCTAAGAAGCATGGACTGAAGCTTCACATTGATGGGGCCCGTATTTTT
species | Glycine max |
transcript | GLYMA20G36590.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAACACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|298168281|gb|HO014456.1|HO014456
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|51335732|gb|CO979598.1|CO979598
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATNNNCTTGGAAAATACTCATGCAAA CTCTGGTGGCAGATGNNNCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|193587465|gb|FK540834.1|FK540834
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAAEST: gi|15812814|gb|BI785089.1|BI785089
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAA
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTEST: gi|19054105|gb|BM732772.1|BM732772
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
EST: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAA CTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
genomic: CTATTCTATCCAACCACCAAGCTTATTTGCTTGGAAAATACTCATGCAAAgtaagcaata ... ctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTT
gttaattgattcaaatttatagcaacattatgactcgtattttacctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTAGCTAAGAAGCATGGACTGAAGCTTCACATTGATGGGGCCCGTATTTTT
ttttacct CT-rich tract
ttgattcaaatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcaatttgctaaattttcttttgttttaaaagtcccatcctgttgttaattgattcaaatttatagcaacattatgactcgtattttacctgaatgcagCTCTGGTGGCAGATGCCTCTCAGTTGAATATACAGACAGAGTTGGAGAGTTAGCTAAGAAGCATGGACTGAAGCTTCACATTGATGGGGCCCGTATTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - cccatcc
- - - - - - - - - - - - - - - - - - - - -tgttgtt