Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaataattttacagggaaattaatagcaggtagttacttcctgagcaactgatgttgaagtctagtttattatatttttttag

Basic information

species Glycine max
transcript GLYMA20G36590.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36590.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g43650.2 (Oryza sativa), 5'ss of exon 5
GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaataattttacagggaaattaatagcaggtagttacttcctgagcaactgatgttgaagtctagtttattatatttttttag
|| ||| ||||||||||  |||| ||||| |||||||| |||||||||||||| |     || || |  |||||   |    |||| |    |  || |  |  |    |  | |     |      | | | || |    | | |     ||  ||| ||
GTGTGCATATCTAAAGGGTTAGGCGCTCCTGTTGGATCAGTTATTGTTGGTTCGACGGCCTTCATAGAAAAGgtctgtt--caattctgtttgttaacttgttaccttaaactgcagatgggatg--taacgatgga----aatatgaacaatgctttcag

upper sequence: GLYMA20G36590.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0036g00520.t01 (Vitis vinifera), 5'ss of exon 6
GTTTGCCTATCTAAAGGTATAGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagt--tcaataattttacagggaaattaatagcaggtagttactt---cctgagcaactgatgttgaagtctagtttattatatttttttag
|| || || || || ||| | |||||||| ||||||  ||| |||||||||||||||| ||||||||| |||||| |  | |   |||||    |   ||||| |   | |  |    |   || ||| | |||   |  |  |||  | | ||   | ||| |||
GTATGTCTCTCAAAGGGTTTGGGTGCTCCCGTTGGAAGTGTGATTGTTGGTTCCAAAAGTTTTATTGCTAAGgtaataatgagatattttgagtgatcattaacaaaggctcttcttctttcccagagaatctggaatcaagctct--tctctttcttctttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|305377783|gb|HO652014.1|HO652014
EST:     GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG                         GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
EST: gi|193638359|gb|FK586727.1|FK586727
EST:     GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAG                         GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
EST: gi|298168281|gb|HO014456.1|HO014456
EST:     GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAG                         GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
EST: gi|51335732|gb|CO979598.1|CO979598
EST:     GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAG                         GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
EST: gi|15812814|gb|BI785089.1|BI785089
EST:     GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAG                         GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC