1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagttcaataattttacagggaaattaatagcaggtagttacttcctgagcaactgatgttgaagtctagtttattatatttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGG
species | Glycine max |
transcript | GLYMA20G36590.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTCEST: gi|193638359|gb|FK586727.1|FK586727
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
EST: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAG GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATCEST: gi|298168281|gb|HO014456.1|HO014456
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
EST: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAG GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATCEST: gi|51335732|gb|CO979598.1|CO979598
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
EST: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAG GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATCEST: gi|15812814|gb|BI785089.1|BI785089
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
EST: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAG GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAAAATTTTATTGCCAAGgtagttcaat ... atttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATC
ggtagttacttcctgagcaactgatgttgaagtctagtttattatatttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGG
aactgat putative branch site (score: 3)
tattttttt putative PPT
ttgaagtctagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttcaataattttacagggaaattaatagcaggtagttacttcctgagcaactgatgttgaagtctagtttattatatttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCATCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG