Sequence
atgc intronic sequence ATGC exonic sequenceATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtatattctattccaatattatatattgtctattcaattgtaaatagtaaaattataaacatttgagctataattcatgtcatatattagttttttacgg...
Basic information
species | Glycine max |
transcript | GLYMA20G36110.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G36110.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g41910.1 (Oryza sativa), 5'ss of exon 6
ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtatattctattccaatattatatattgtctattcaattgtaaatagtaaaattataaacatttgagctataattcatgtcatatattagttttttacgg-----
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ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtatatt-tatttttgagttgcagaggcaacttctatccttgaattctgatgcagactgttcttcgcttctgatg-atttcacatctaaatttttggtgacatag
upper sequence: GLYMA20G36110.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G353114_T01 (Zea mays), 5'ss of exon 9
ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtata-ttctattccaatattatatattgtctattcaattgtaaatagtaaaattataaacatttgagctataattcatgtcatatattagttttttacgg-------
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ATTGTGGAGGTATTTTCCAAGTGCGGAATAATAAAGGAGgtatacttttagtctgctatgttgcaaagacaaaattgttgtg--ctgtaacatt-----cattcttgatgttgttt-tgatgtttctcactcgtggaaagaattagt
upper sequence: GLYMA20G36110.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G171660_T02 (Zea mays), 5'ss of exon 6
ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtata-ttctattccaatattatatattgtctattcaattgtaaatagtaaaattataaacatttgagctataattcatgtcatatattagttttttacgg---
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ATTGTGGAGGTATTTTCCAAGTGCGGAATAATAAAGGAGgtatacttttagtctgctatgtcgcagagacaa---aattgtag-tgctgtaacattcattcttgatgttgttttgaacttttgatatttctcactcgtgggaa
upper sequence: GLYMA20G36110.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G084716_T01 (Zea mays), 5'ss of exon 6
ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtata-ttctattccaatattatatattgtctattcaattgtaaatagtaaaattataaacatttgagctataattcatgtcatatattagttttttacgg-------
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ATTGTGGAGGTATTTTCCAAGTGCGAAATAATAAAGGAGgtatacttttagtctgctatgttgcaaagacaaaattgttgtg--ctgtaacatt-----cattcttgatgttgttt-tgatgtttctcactcgtggaaagaattagt
upper sequence: GLYMA20G36110.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G411893_T01 (Zea mays), 5'ss of exon 5
ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtata-ttctattccaatattatatattgtctattcaattgtaaatagtaaaattataaacatttgagctataattcatgtcatatattagttttttacgg-------
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ATTGTGGAGGTATTTTCCAAGCGCGGAATAATAAAGGAGgtatacttttagtctgctatgttgcaaagacaaaattgttgtg--ctgtaacatt-----cattcttgatgttgttt-tgatgtttctcactcgtggaaagaattagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208154719|gb|GD957536.1|GD957536EST: ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAG GACCCCGAAACCAAAAGACCTCGTGTGAAGCTCTATGTTGATAAAGAGACA
genomic: ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtatattcta ... gttataatagGACCCCGAAACCAAAAGACCTCGTGTGAAGCTCTATGTTGATAAAGAGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGgtatattctattccaatattatatattgtctattcaattgtaaatagtaaaattataaacatttgagctataattcatgtcatatattagttttttacgg
- GTGGAG
- - TGGAGG
- - - - - - - - - - - - - - - - AAGGAG