1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...actaatctactcatacctatcatattcatgcaactattgtatttgtgttccctaattttgtctcttctttttcatgtttgctgcttgttttctcctggagATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATG
species | Glycine max |
transcript | GLYMA20G36110.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAGATGTTAAAGAGGAGTGTACAAAGCTTGGTCCTGTGGATTCAGTCAAG ATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGGEST: gi|9984040|gb|BE658148.1|BE658148
genomic: AAGATGTTAAAGAGGAGTGTACAAAGCTTGGTCCTGTGGATTCAGTCAAGgtagttaatc ... tctcctggagATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGG
EST: AAGATGTTAAAGAGGAGTGTACAAAGCTTGGTCCTGTGGATTCAGTCAAG ATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGGEST: gi|22928101|gb|BU545240.1|BU545240
genomic: AAGATGTTAAAGAGGAGTGTACAAAGCTTGGTCCTGTGGATTCAGTCAAGgtagttaatc ... tctcctggagATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGG
EST: AAGATGTTAAAGAGGAGTGTACAAAGCTTGGTCCTGTGGATTCAGTCAAG ATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGGEST: gi|19052889|gb|BM731556.1|BM731556
genomic: AAGATGTTAAAGAGGAGTGTACAAAGCTTGGTCCTGTGGATTCAGTCAAGgtagttaatc ... tctcctggagATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGG
EST: AAGATGTTAAAGAGGAGTGTACAAAGCTTGGTCCTGTGGATTCAGTCAAG ATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGG
genomic: AAGATGTTAAAGAGGAGTGTACAAAGCTTGGTCCTGTGGATTCAGTCAAGgtagttaatc ... tctcctggagATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGG
tgttccctaattttgtctcttctttttcatgtttgctgcttgttttctcctggagATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATG
ccctaat putative branch site (score: 3)
tctcttctttttcatg putative PPT
taattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaatctactcatacctatcatattcatgcaactattgtatttgtgttccctaattttgtctcttctttttcatgtttgctgcttgttttctcctggagATATGTGAGAATCATCCTCAGGGAGTTGTTTTGGTAAGATTCAAGGATAGGAAGGATGCCCAAAAGTGCATAGAATTGATGAACGGACGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - -catacct
- - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc