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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGTGGTCTGAAGGAAGTAGTGAGTGGCAGCCCTTGTCCTCGGTTTCTGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTGgtatgacttttcttctctttcacttaggattttccattattattattattattattattattattattatttgtatttgttgttcttgttgtttgcggagcttagagactgacctgttatgtag

Basic information

species Glycine max
transcript GLYMA20G36110.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193313862|gb|FK281259.1|FK281259
EST:     ACCTGATTCTTCAACTACTG                         TGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAGAGGAGATTCAGG
genomic: ACCTGATTCTTCAACTACTGgtatgacttt ... tgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
EST: gi|298193477|gb|HO033911.1|HO033911
EST:     TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTG                         TGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
genomic: TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTGgtatgacttt ... tgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
EST: gi|213601316|gb|DB968674.1|DB968674
EST:     TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTG                         TGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
genomic: TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTGgtatgacttt ... tgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
EST: gi|18710818|gb|BM522543.1|BM522543
EST:     TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTG                         TGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
genomic: TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTGgtatgacttt ... tgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
EST: gi|6482635|gb|AW201880.1|AW201880
EST:     TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTG                         TGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG
genomic: TGACCTGTGGGCTCAAATTAACCGGCAGGGACCTGATTCTTCAACTACTGgtatgacttt ... tgttatgtagTGTCTGCTCCTGATGTTGATGAGTTTGAAAGATGGCAAAAGGAGATTCAGG