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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAGgtgtgcagtaagagtagcaatttgtgtttgttttaattcccagtattccctactattaaaattaaatagacagttataaactatttttgcaaattttgaatgtcttcacccttttttatag

Basic information

species Glycine max
transcript GLYMA20G35300.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g04640.t01 (Vitis vinifera), 5'ss of exon 6
AGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAGgtgtgcagtaagagtagcaatttgtgtttgttttaattcccagtattccctactattaaaattaaatagacagttataaactatttttgcaaattttgaatgtcttcacccttttttatag
 || ||||||||||||||||| || ||||  |  ||||||||||||||||| ||||  ||||||||      | |   | |  ||   | ||||||  ||      | || |    |||||     |  |   ||  | | || |||||| |  |                              
GGAACAGGCTTCTAGTGCTTCAGGAAAAGCAGCATCTGGCATGTCCAGTGATGAAAGGAATCAGgttcctgtttaatttgg--atacctttttgttaaaaa----ggcatactgatctattcg--ctgtacttactatgacaacctatttatttag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254342793|gb|GR858955.1|GR858955
EST:     GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGNNNNNNNTCAG                         AGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATG
genomic: GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAGgtgtgcagta ... ttttttatagAGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATG
EST: gi|58022318|gb|CX709059.1|CX709059
EST:     GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGNNNNNNNTCAG                         AGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATG
genomic: GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAGgtgtgcagta ... ttttttatagAGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATG
EST: gi|254342792|gb|GR858954.1|GR858954
EST:     GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGNNNNNNNTCAG                         AGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTC
genomic: GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAGgtgtgcagta ... ttttttatagAGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTC