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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattatgctagggaatttggaattacattaatgattaagatgatgcaaacatgttttattttgatgaaatctaatgtatcaaattttctattggttgcagAGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAG

Basic information

species Glycine max
transcript GLYMA20G35300.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254342793|gb|GR858955.1|GR858955
EST:     TCTAGTGACGAAGCAGATGCGGATGATGAATGGACAGACAAAAGTGCAAG                         AGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGA
genomic: TCTAGTGACGAAGCAGATGCGGATGATGAATGGACAGACAAAAGTGCAAGgtcagtggag ... ttggttgcagAGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGA
EST: gi|58022318|gb|CX709059.1|CX709059
EST:     TCTAGTGACGAAGCAGATGCGGATGATGAATGGACAGACAAAAGTGCAAG                         AGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGA
genomic: TCTAGTGACGAAGCAGATGCGGATGATGAATGGACAGACAAAAGTGCAAGgtcagtggag ... ttggttgcagAGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGA
EST: gi|254342792|gb|GR858954.1|GR858954
EST:     TCTAGTGACGAAGCAGATGCGGATGATGAATGGACAGACAAAAGTGCAAG                         AGAGCAG-CTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGA
genomic: TCTAGTGACGAAGCAGATGCGGATGATGAATGGACAGACAAAAGTGCAAGgtcagtggag ... ttggttgcagAGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacatgttttattttgatgaaatctaatgtatcaaattttctattggttgcagAGAGCAGGCTTCTAGTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAG
                       atctaat  putative branch site (score: 3)
 ttttctatt  putative PPT
 ttttattttgatgaaa  TA-rich tract