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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCAAGCCTCTGGGCATCGCCAAGAAGCCCAAGCCCAAGCCCAAGCCCTCCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaaccctagccctaactctatccctattggcttattcgtttccattcatttctccgaactggtatagcag

Basic information

species Glycine max
transcript GLYMA20G35300.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35300.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g58340.1 (Oryza sativa), 5'ss of exon 1
CTCCAAGCCTCTGGGCATCGCCAAGAAGCCCAAGCCCAAGCCCAAGCCCT---CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaaccctagccctaactcta-tccctattggct--tattcgtttccattcatttctccga--actggtatagcag--------------------
   |  |     ||    ||    |||||  |||| |    ||    ||    ||||||||||||| |||||||| || |||   |||||| ||||||||||||||||   |  |||| |      ||   |     ||||       |   |  |  ||  |||| |     ||| ||  || |                    
---CGCGGGGGCGGCTGCCGAACGGAAGCGGAAGCGCGCCGCCGCCGCCAAGACCGTTTCCCTCAAGAACCAGATCCGCTCCACCGAGCGCCTGCTCCGCAAGgtaacttaa--cctacctggggttcgggtttgggttggaaagcgctgcctctcgctcgcttctgctgctgctgctactgctgctaattctgctcccatgatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899691|gb|BE608659.1|BE608659
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|208201256|gb|GE001724.1|GE001724
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGG
EST: gi|298191392|gb|HO038871.1|HO038871
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCACTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|298191906|gb|HO035988.1|HO035988
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|26269006|gb|CA820069.1|CA820069
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|5606463|gb|AI900497.1|AI900497
EST:     CCGTTTTCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|37995190|gb|CF806779.1|CF806779
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|17963780|gb|BM270525.1|BM270525
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|7146557|gb|AW508479.1|AW508479
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTNCCGAGGTGCGAGACGCGCANGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|254342792|gb|GR858954.1|GR858954
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|208064672|gb|GD865948.1|GD865948
EST:     ATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: ATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|37994097|gb|CF805843.1|CF805843
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|208065370|gb|GD866296.1|GD866296
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGG
EST: gi|207822205|gb|GD793566.1|GD793566
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCG
EST: gi|151396491|gb|EV266368.1|EV266368
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGAGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAGGCGCTG
EST: gi|193624490|gb|FK576568.1|FK576568
EST:     CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAG                         AATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAG
genomic: CCGTTTCCCTCAAAAACCAGATTCGATCCCTTGAGCGCATGCTCCGCAAGgtaaccctaa ... ggtatagcagAATCTGCCTCCCGAGGTGCGAGACGCGCAGGAACAGAAGTTGGAG