1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCGGTGATGATTCGGAGATAGTTGACCGGAGAAACGGGCTGCGCAAACAGATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAGgttcattatttttgaattttgatcatccatgccattatttgtatgatttaggatgttgatattctgcaagagtttggttttagttgtgcgagagccctag...
species | Glycine max |
transcript | GLYMA20G35300.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAG AGACTGGCAGTGAGGATGATGGTCTTTTGGATCTGAGTGATGATGANNNNNEST: gi|58022318|gb|CX709059.1|CX709059
genomic: GATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAGgttcattatt ... gttgtggcagAGACTGGCAGTGAGGATGATGGTCTTTTGGATCTGAGTGATGATGATTTTT
EST: GATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAG AGACTGGCAGTGAGGATGATGGTCTTTTGGATCTGAGTGATGATGANNNNNEST: gi|254342792|gb|GR858954.1|GR858954
genomic: GATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAGgttcattatt ... gttgtggcagAGACTGGCAGTGAGGATGATGGTCTTTTGGATCTGAGTGATGATGATTTTT
EST: GATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAG AGACTGGCAGTGAGGATGATGGTCTTTTGGATCTGAGTGATGATGANNNNNEST: gi|193521200|gb|FK480311.1|FK480311
genomic: GATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAGgttcattatt ... gttgtggcagAGACTGGCAGTGAGGATGATGGTCTTTTGGATCTGAGTGATGATGATTTTT
EST: GATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAG AGACTGGCAGTGAGGATGATGGTCTTTTGGATCTGA
genomic: GATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAGgttcattatt ... gttgtggcagAGACTGGCAGTGAGGATGATGGTCTTTTGGATCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGGTGATGATTCGGAGATAGTTGACCGGAGAAACGGGCTGCGCAAACAGATTGAAGATAGGTTGGTTGCAGCTGCTGCAAGTGGCAAGGATTTAGAAGgttcattatttttgaattttgatcatccatgccattatttgtatgatttaggatgttgatattctgcaagagtttggttttagttgtgcgagagccctag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC