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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcagtaagagtagcaatttgtgtttgttttaattcccagtattccctactattaaaattaaatagacagttataaactatttttgcaaattttgaatgtcttcacccttttttatagAGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATGAAGTTGTCAAGATTTGGGTCTTCTTCTGGCCATAATTCATCTGCGCAGA

Basic information

species Glycine max
transcript GLYMA20G35300.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254342793|gb|GR858955.1|GR858955
EST:     GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGNNNNNNNTCAG                         AGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATG
genomic: GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAGgtgtgcagta ... ttttttatagAGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATG
EST: gi|58022318|gb|CX709059.1|CX709059
EST:     GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGNNNNNNNTCAG                         AGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATG
genomic: GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAGgtgtgcagta ... ttttttatagAGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATG
EST: gi|254342792|gb|GR858954.1|GR858954
EST:     GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGNNNNNNNTCAG                         AGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTC
genomic: GTGCTTCTGGGAAAGGTGTGTCTGGCATGTCCAGTGACGAAAAAAATCAGgtgtgcagta ... ttttttatagAGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagacagttataaactatttttgcaaattttgaatgtcttcacccttttttatagAGGCAGATTTCTGCTAGAGCTTTGATGCCTCCTCCTCGTCCTTCAAACATGAAGTTGTCAAGATTTGGGTCTTCTTCTGGCCATAATTCATCTGCGCAGA
                                  tgtcttcacccttttt  CT-rich tract
 ttataaactatttttg  TA-rich tract