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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgttatattacatgacatctctctctctttttctttctgatctgcttttgtttgggtctcatcatgagttgatcttaatctgacaaaaaccgcacttttttgtgcag

Basic information

species Glycine max
transcript GLYMA20G35280.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327317|gb|FK019564.1|FK019564
EST:     TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAA
genomic: TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAA
EST: gi|151408841|gb|EV278649.1|EV278649
EST:     TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAAGCTAAGAATCATGAAAGGATCAGAGGC
genomic: TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
EST: gi|5760778|gb|AI966141.1|AI966141
EST:     GTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
genomic: GTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
EST: gi|151406538|gb|EV276353.1|EV276353
EST:     TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
genomic: TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
EST: gi|192326605|gb|FK017292.1|FK017292
EST:     TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAAGCTAAGAATCATGAAAAGGATCAGAGG
genomic: TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAA-GGATCAGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgttatattacatgacatctctctctctttttctttctgatctgcttttgtttgggtctcatcatgagttgatcttaatctgacaaaaaccgcacttttttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG