1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagaagagttttagtttttgtttgtgtttggttgagatgaaatgaaactgcttaattgatcaaattttataatatttatgaaaatgaccgtggttatgttatgtttatggcttttcagGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA
species | Glycine max |
transcript | GLYMA20G35280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAG GAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATEST: gi|151408841|gb|EV278649.1|EV278649
genomic: CTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAGgtgagaagag ... ggcttttcagGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACAT
EST: CTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAG GAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATEST: gi|23726728|gb|BU761366.1|BU761366
genomic: CTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAGgtgagaagag ... ggcttttcagGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACAT
EST: CTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAG GAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATEST: gi|151406538|gb|EV276353.1|EV276353
genomic: CTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAGgtgagaagag ... ggcttttcagGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACAT
EST: AAATCTCTAGAAAATATGTTCGAGTTGACCATAG GAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATEST: gi|192326605|gb|FK017292.1|FK017292
genomic: AAATCTCTAGAAAATATGTTCAAGTTGACCATAGgtgagaagag ... ggcttttcagGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACAT
EST: CTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAG GAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACAT
genomic: CTACACACAACTCCTCAAATCTCTAGAAAATATGTTCAAGTTGACCATAGgtgagaagag ... ggcttttcagGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACAT
attttataatatttatgaaaatgaccgtggttatgttatgtttatggcttttcagGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA
cttttc CT-rich tract
ataatatttatgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaagagttttagtttttgtttgtgtttggttgagatgaaatgaaactgcttaattgatcaaattttataatatttatgaaaatgaccgtggttatgttatgtttatggcttttcagGAGAGCATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG