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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttatattacatgacatctctctctctttttctttctgatctgcttttgtttgggtctcatcatgagttgatcttaatctgacaaaaaccgcacttttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGCAAGGGGTTTGGGTTGTGCTGTATGAGGAACCAAATCACTAAAAAATTAC

Basic information

species Glycine max
transcript GLYMA20G35280.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327317|gb|FK019564.1|FK019564
EST:     TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAA
genomic: TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAA
EST: gi|151408841|gb|EV278649.1|EV278649
EST:     TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAAGCTAAGAATCATGAAAGGATCAGAGGC
genomic: TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
EST: gi|5760778|gb|AI966141.1|AI966141
EST:     GTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
genomic: GTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
EST: gi|151406538|gb|EV276353.1|EV276353
EST:     TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
genomic: TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGC
EST: gi|192326605|gb|FK017292.1|FK017292
EST:     TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGA                         CATGTTTGTGACTTCTTGCAGAAAGCTAAGAATCATGAAAAGGATCAGAGG
genomic: TATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAgtaagtgtta ... ttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAA-GGATCAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtctcatcatgagttgatcttaatctgacaaaaaccgcacttttttgtgcagCATGTTTGTGACTTCTTGCAGAAGGCTAAGAATCATGAAAGGATCAGAGGCAAGGGGTTTGGGTTGTGCTGTATGAGGAACCAAATCACTAAAAAATTAC
                         atctgac  putative branch site (score: 3)
                                        cactttttt  putative PPT
                   atcttaat  TA-rich tract