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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAACAACAAAAGACCTTTAACTGAAACCTCTGATGAGTGTGCTTCAAATGGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttataattaacatattattattattattattattattatgacttaaaggtcattaatttatttatctcatgttgtttgttgatgattatggatgcttttaagttctttgtgtgtttgtcaagattttgagttgagtgattcattgaatttgttgacatgtattacag

Basic information

species Glycine max
transcript GLYMA20G35280.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327317|gb|FK019564.1|FK019564
EST:     GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAA                         GACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
genomic: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttat ... tgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
EST: gi|151408841|gb|EV278649.1|EV278649
EST:     GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAA                         GACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
genomic: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttat ... tgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
EST: gi|23726728|gb|BU761366.1|BU761366
EST:     GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAA                         GACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
genomic: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttat ... tgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
EST: gi|192326605|gb|FK017292.1|FK017292
EST:     GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAA                         GACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
genomic: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttat ... tgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT