1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtttataattaacatattattattattattattattattatgacttaaaggtcattaatttatttatctcatgttgtttgttgatgattatggatgcttttaagttctttgtgtgtttgtcaagattttgagttgagtgattcattgaatttgttgacatgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTTCAGGAGAGTGAGGGTGCTGGAATTTATGTGAAAGTGAGCATGGATGGA
species | Glycine max |
transcript | GLYMA20G35280.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAA GACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTEST: gi|151408841|gb|EV278649.1|EV278649
genomic: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttat ... tgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
EST: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAA GACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTEST: gi|23726728|gb|BU761366.1|BU761366
genomic: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttat ... tgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
EST: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAA GACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTEST: gi|192326605|gb|FK017292.1|FK017292
genomic: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttat ... tgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
EST: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAA GACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
genomic: GGTACTTCTAGTGCTCCACATGAGAAAACTGAAACAGCCCCTCCTGCCAAgtaagtttat ... tgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCT
gtttgtcaagattttgagttgagtgattcattgaatttgttgacatgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTTCAGGAGAGTGAGGGTGCTGGAATTTATGTGAAAGTGAGCATGGATGGA
tgttgac putative branch site (score: 3)
attgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttataattaacatattattattattattattattattatgacttaaaggtcattaatttatttatctcatgttgtttgttgatgattatggatgcttttaagttctttgtgtgtttgtcaagattttgagttgagtgattcattgaatttgttgacatgtattacagGACTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTTCAGGAGAGTGAGGGTGCTGGAATTTATGTGAAAGTGAGCATGGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA