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gtaaatttgaacaattttgcatacctgttgtgcagaaatgtttgattttacaccttatcagttttaaaatgtcatgaagataactttcttgtagtacattacagCTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAGATCAAGTGCTTGGAAACGTTAGGCAGTTTGAATGCTGGAGCTGATTCCA
species | Glycine max |
transcript | GLYMA20G34750.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAA CTTATAGGGCGGGAAG-ATGGTGATEST: gi|209701615|gb|BW660971.1|BW660971
genomic: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAGgtaaatttga ... tacattacagCTTATAGGGCGG-AAGGATGGTGAT
EST: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAG CTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAGEST: gi|193491125|gb|FK455564.1|FK455564
genomic: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAGgtaaatttga ... tacattacagCTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAG
EST: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAG CTTATAGGGCGGAAGGATGGTGATEST: gi|15337676|gb|BI498332.1|BI498332
genomic: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAGgtaaatttga ... tacattacagCTTATAGGGCGGAAGGATGGTGAT
EST: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAG CTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAGEST: gi|193660091|gb|FK604261.1|FK604261
genomic: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAGgtaaatttga ... tacattacagCTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAG
EST: TGTTGGTGGTCCACCAAAG CTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAGEST: gi|209708386|gb|BW665359.1|BW665359
genomic: TGTTGGTGGTCCACCAAAGgtaaatttga ... tacattacagCTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAG
EST: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAG CTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAGEST: gi|22933986|gb|BU551125.1|BU551125
genomic: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAGgtaaatttga ... tacattacagCTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAG
EST: TTGATAATGCCAGACNCTATTGCACAAATGCTGTTGGTGGTCCACCAAAG CTTATAGGGCGGAAGGATGGTGATCACAANCTACTAGTGGATCGTGAAGAG
genomic: TTGATAATGCCAGACTCTATTGCACAAATGCTGTTGGTGGTCCACCAAAGgtaaatttga ... tacattacagCTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAG
acaccttatcagttttaaaatgtcatgaagataactttcttgtagtacattacagCTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAGATCAAGTGCTTGGAAACGTTAGGCAGTTTGAATGCTGGAGCTGATTCCA
agataac putative branch site (score: 3)
ttatcagttttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgaacaattttgcatacctgttgtgcagaaatgtttgattttacaccttatcagttttaaaatgtcatgaagataactttcttgtagtacattacagCTTATAGGGCGGAAGGATGGTGATCACAATCTACTAGTGGATCGTGAAGAGATCAAGTGCTTGGAAACGTTAGGCAGTTTGAATGCTGGAGCTGATTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT