1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cacatttttttcattctatttatctttttttctttctctttcctttctattttattgttcgtacaaacaaagcatacgattttaattggttgaatgatagGTTTTGGGTGTGGAGTCTCAGCAGAAAAAAAAGCTGAAGGGAATTCTATTGGCAGCTACAAG
species | Glycine max |
transcript | GLYMA20G34750.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGTTATTTAGCATTTCACTGGAACCAAGCTACATCTGTCATTAGTCAG GTTTTGGGTGTGGAGTCTCAGCAGNNNNNNNNGCTGAAGGGAATTCTATTGEST: gi|6454147|gb|AW184895.1|AW184895
genomic: TCAGTTATTTAGCATTTCACTGGAACCAAGCTACATCTGTCATTAGTCAGgtatgttaat ... tgaatgatagGTTTTGGGTGTGGAGTCTCAGCAGAAAAAAAAGCTGAAGGGAATTCTATTG
EST: TCAGTTATTTAGCATTTCACTGGAACCAAGCTACATCTGTCATTAGTCAG GTTTTGGGAGTGGAGTCTCATCAGAAAEST: gi|298176619|gb|HO023206.1|HO023206
genomic: TCAGTTATTTAGCATTTCACTGGAACCAAGCTACATCTGTCATTAGTCAGgtatgttaat ... tgaatgatagGTTTTGGGTGTGGAGTCTCAGCAGAAA
EST: TCAGTTATTTAGCATTTCACTGGAACCAAGCTACATCTGTCATTAGTCAG GTTTTGGGTGTGGAGTCTCAGCAG
genomic: TCAGTTATTTAGCATTTCACTGGAACCAAGCTACATCTGTCATTAGTCAGgtatgttaat ... tgaatgatagGTTTTGGGTGTGGAGTCTCAGCAG
tctattttattgttcgtacaaacaaagcatacgattttaattggttgaatgatagGTTTTGGGTGTGGAGTCTCAGCAGAAAAAAAAGCTGAAGGGAATTCTATTGGCAGCTACAAG
ttttaat putative branch site (score: 3)
atacgattttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatttttttcattctatttatctttttttctttctctttcctttctattttattgttcgtacaaacaaagcatacgattttaattggttgaatgatagGTTTTGGGTGTGGAGTCTCAGCAGAAAAAAAAGCTGAAGGGAATTCTATTGGCAGCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - -ttcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatacg