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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGTGGTTGAGGCAGATGCTTTCAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaaccatgacctccatgttattattatcatatcttcccactaaactgaccactattgtatgtgcagcatgtgactaatgttataga...

Basic information

species Glycine max
transcript GLYMA20G34750.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34750.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g43010.1 (Oryza sativa), 5'ss of exon 6
TGTGGTGGTTGAGGCAGATGCTTTCAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctg-tgtgaaccatgacctccatgttattattatcatatcttcccactaaactgaccactattgtatgtgcagcatgtgactaatgttataga
 |||||||||||||| ||||| ||||||||||  ||||| || ||  | ||| |||||||||  || |||||  | ||||||||||| ||||||||  |||||      || |   |||    ||   ||| |   |||    |||| |    |   |  |    |    | ||| |  |  || |   ||    || | |
GGTGGTGGTTGAGGCGGATGCGTTCAAGGAGACGGACGTGATCTACCGTGCCATTAGCTCCATGGGCCACCACAACGACATGCTCCAGACTGCTGAGCTGgtaattaattgctactaactcacacgcacatatatatatatatatatatatatatatatatatatatatatatatatata-tatatatatatatatacata

upper sequence: GLYMA20G34750.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G04280.1 (Arabidopsis thaliana), 5'ss of exon 6
TGTGGTGGTTGAGGCAGATGCTTTCAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaaccatgacctccatgtt--attattatcatatcttcccactaaactgaccactattgtatgtgcagcatgtgactaatgttataga
 |||||  | |||||||| || || |||||||  || || || |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||| | |  | | |    |  |    ||||  |  ||| |    |||| ||     | |||   | || ||| | ||   |     | |   || || ||| 
GGTGGTTATAGAGGCAGACGCGTTTAAGGAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTGAATTGgtacgttgttct-tagttctagctagccatcctcgattgtgtatatatatttggctttaacatgctac-att-tctggttatttccttatatatattttag-

upper sequence: GLYMA20G34750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g04820.t01 (Vitis vinifera), 5'ss of exon 6
------TGTGGTGGTTGAGGCAGATGCTTTCAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaaccatgacctccatgttattattatcatatct--tcccactaaactgaccactattgta----tgtgcagcatgtgactaatgttataga----------------------------------
      |||||| || ||||||||||||||||| ||||  || ||||| || ||||||||||||||      ||| |   |||||||||| |||||||||||  |||||  ||  |   | ||     ||   |||  |  ||| |      |   | ||   ||| |    ||   || |    | || |   | || |||   | | |                                    
AAACTGTGTGGTAGTGGAGGCAGATGCTTTCAAAGAGACCGATGTCATTTACAGAGCCCTTAGCTC------TCATCGCCATGACATGCTTCAAACTGCTGAGCTGgtactctctttaattaattcacacacacattcttatataaaagagcccagtgcctacaaattttttacctatgcagtcatatgtactttttgtctag-atcacaatattctgaaacattgacaaatttactcaaaaatag

upper sequence: GLYMA20G34750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g04850.t01 (Vitis vinifera), 5'ss of exon 6
------TGTGGTGGTTGAGGCAGATGCTTTCAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaaccatgacctccatgttattattatcatatcttcccactaaactgaccactattgtatgtgcagcatgtgactaatgttataga-------------
      |||||| || ||||||||||||||||| ||||  || ||||| || ||||||||||||||      ||| ||  |||||||||| |||||||||||  |||||    ||| | | |  |      |  |  |||||  ||| || | |  | |    ||      ||||  |  |   | | ||  | |  ||  | |               
AAACGCTGTGGTAGTGGAGGCAGATGCTTTCAAAGAGACCGATGTCATTTACAGAGCCCTTAGCTC------TCATCACCATGACATGCTTCAAACTGCTGAGCTGgtaa--ctctctttcacacgcacattttactttattcatat-atttttatctagatcacatctttctatcatgcgaatatcctgaaaattttgacaaatttactcgaaaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259440|gb|BG882348.1|BG882348
EST:     ATGCTCCAAACTGCTGAATTG                         GTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTGGTGACAGCTCTA
genomic: ATGCTCCAAACTGCTGAATTGgtatgcttct ... atctgaacagGTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTGGTGACAGCTCTA
EST: gi|208256458|gb|GE053227.1|GE053227
EST:     TCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTG                         GTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTGGTGACAGCTCTA
genomic: TCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttct ... atctgaacagGTGCATCAATCTTCCACTGATGCTGCATCATCTCTGCTGGTGACAGCTCTA